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Protein Structure Prediction
Methods and Protocols
by David M. Webster
422 Pages, Published 2000 by Springer Science & Business Media
ISBN-13: 978-1-59259-368-2, ISBN: 1-59259-368-2

"In SAP the internal description of the structural environments is captured as interatomic vector sets. In a multiple version, in which the positions in two proteins have been equivalenced (say, i andj), these vector sets are combined to produce an averaged set in which the multiple vector ... This is also done in the various classification databases (CATH, SCOP, etc.) ... This approach is experimental and is not yet generally imple ..."






Wiley Series in Bioinformatics Ser.
Introduction to Protein Structure Prediction : Methods and Algorithms
by Huzefa Rangwala, Editor: George Karypis
500 Pages, Published 2011 by John Wiley & Sons
ISBN-13: 978-1-118-09946-9, ISBN: 1-118-09946-X

"J. Wang, H. Lee, and S. Ahmad. Prediction and evolutionary information analysis of protein solvent accessibility using multiple linear regression. Proteins, 61:481– 491, 2005. 208. Z. Xu, C. Zhang, S. Liu, and Y. Zhou. QBES: Predicting real values of solvent accessibility from sequences by efficient, constrained energy optimization. Proteins, 63:961–966, 2006. 209. H. Naderi-Manesh, M. Sadeghi, S . Arab, and A.A.M. Movahedi. Predict ..."






Protein Structure Prediction
A Practical Approach: A Practical Approach
318 Pages, Published 1996 by Oxford University Press, Usa
ISBN-13: 978-0-19-158899-0, ISBN: 0-19-158899-7

"Levitt, M. (1992). J. Mol Biol, 226, 507. 35. Blundell, T. L., Sibanda, B. L., Sternberg, M. J. E., and Thornton, J. M. (1987). Nature, 326, 347. 36. Blundell, T. L., Carney, D., Gardner, S., Hayes, F., Howlin, B., Hubbard, T., et al (1988). Eur. J. Biochem., 172, 513. 37. Sutcliffe, M. J., Haneef, I., Carney, D., and Blundell, T. L. (1987). Protein Eng., 1, 377. 38. Srinivasan, N. and Blundell, T. L. (1993). Protein Eng., 6, 501. ..."






Biological and Medical Physics, Biomedical Engineering
Computational Methods for Protein Structure Prediction and Modeling : Volume 2: Structure Prediction
by Ying Xu, Dong Xu, Jie Liang
322 Pages, Published 2010 by Springer Science & Business Media
ISBN-13: 978-0-387-68825-1, ISBN: 0-387-68825-0

"Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J., Rapp, and B.A., Wheeler, D.L. 2000. GenBank. Nucleic Acids Res. 28:15-18. Bernstein, BC, Koetzle, T.F., Williams, G.J.B., Meyer, E.F., Brice, M.D., Rodgers, J.R., Kennard, O. , Shimanouchi, T., and Tasumi, M. 1977. The Protein Data Bank: A computer based archival file for macromolecular structures. J. Mol. Biol. 112:535-542. Binkowski, T.A., Adamian, L., and Liang, J. 2003 ..."






Immunoinformatics
Predicting Immunogenicity in Silico
by Darren R. Flower
438 Pages, Published 2007 by Springer Science & Business Media
ISBN-13: 978-1-60327-118-9, ISBN: 1-60327-118-X






PCR Primer Design Vol. 402
by Anton Yuryev
431 Pages, Published 2007 by Springer Science & Business Media
ISBN-13: 978-1-59745-528-2, ISBN: 1-59745-528-8







ISBN-13: 978-3-031-05914-8, ISBN: 3-031-05914-X

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Ying Xu

Dong Xu

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