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  | | Biological and Medical Physics, Biomedical Engineering Ser. Computational Methods for Protein Structure Prediction and Modeling by Ying Xu, Jie Liang, Dong Xu 396 Pages, Published 2007 by Springer Science & Business Media ISBN-13: 978-0-387-68372-0, ISBN: 0-387-68372-0 "Berendsen, H. J. C., J. R. Grigera, and T. P. Straatsma. 1987. The missing term in effective pair potentials. J. Phys. Chem. 91:6269–6271. Berman, H. M., T. Battistuz, T. N. Bhat, W. F. Bluhm, P. E. Bourne, K. Burkhardt, Z. Feng, G. L. Gilliland, L. Iype, S. Jain, P. Fagan, J. Marvin, D. Padilla, V. Ravichandran, B. Schneider, N. Thanki, H. Weissig, J. D. Westbrook, and C. Zardecki. 2002. The protein data bank. Acta. Crystallogr. D ..." |
 | | Biological and Medical Physics, Biomedical Engineering Computational Methods for Protein Structure Prediction and Modeling : Volume 2: Structure Prediction by Ying Xu, Dong Xu, Jie Liang 322 Pages, Published 2010 by Springer Science & Business Media ISBN-13: 978-0-387-68825-1, ISBN: 0-387-68825-0 "Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J., Rapp, and B.A., Wheeler, D.L. 2000. GenBank. Nucleic Acids Res. 28:15-18. Bernstein, BC, Koetzle, T.F., Williams, G.J.B., Meyer, E.F., Brice, M.D., Rodgers, J.R., Kennard, O. , Shimanouchi, T., and Tasumi, M. 1977. The Protein Data Bank: A computer based archival file for macromolecular structures. J. Mol. Biol. 112:535-542. Binkowski, T.A., Adamian, L., and Liang, J. 2003 ..." |
 | | Computational Molecular Biology Ser. Current Topics in Computational Molecular Biology by Michael Q. Zhang, Tao Jiang, Ying Xu Published 2002 ISBN-13: 978-0-262-29251-1, ISBN: 0-262-29251-3 |
 | | Current Topics in Computational Molecular Biology by Tao Jiang, Michael Q. Zhang, Ying Xu Published 2002 ISBN-13: 978-0-585-43730-9, ISBN: 0-585-43730-0 |
 | | Computational Methods for Understanding Bacterial and Archaeal Genomes by Ying Xu, J. Peter Gogarten 473 Pages, Published 2008 by Imperial College Press ISBN-13: 978-1-86094-983-8, ISBN: 1-86094-983-5 "Franke AE, Clewell DB (1981) Evidence for a chromosome-borne resistance transposon (Tn916) in Streptococcus faecalis that is capable of “conjugal” transfer in the absence of a conjugative plasmid. J Bacteriol 145:494–502. Fraser CM, Gocayne JD, White O, Adams MD, Clayton ... Frost LS, Ippen-Ihler K, Skurray RA (1994) Analysis of the sequence and gene products of the transfer region of the F sex factor. Microbiol Rev 58:162–210. Fro ..." |
 | | Computational Methods for Understanding Bacterial and Archaeal Genomes by Ying Xu, J. Peter Gogarten 496 Pages, Published 2008 by World Scientific ISBN-13: 978-1-908979-01-8, ISBN: 1-908979-01-1 "We are very grateful to the following colleagues who have critically reviewed the drafts of the chapters of the book at various stages: Siv G.E. Andersson, S.J.W. Busby, Luis Delay, Dan Drell, Jonathan Filee, Greg Fournier, Derrick Fouts, Maria Pilar Francino, Robert Friedman, Joel Graber, Roy Gross, Loren Hauser, Jinling Huang, Anders Krogh, Pascal Lapierre, John Leigh, Shoudan Liang, Bill Majoros, Trina Montgomery, Andres Moya, J ..." |
 | | Current Topics in Computational Molecular Biology by Tao Jiang, Ying Xu and Michael Q. Zhang by Tao Jiang, Ying Xu, Michael Q. Zhang Printed Access Code, 556 Pages, Published 2002 by A Bradford Book ISBN-13: 978-0-262-27630-6, ISBN: 0-262-27630-5 "The book also contains an introductory chapter, as well as one on general statistical modeling and computational techniques in molecular biology. Each chapter presents a self-contained review of a specific subject." |
 | | Rebalancing Economies in Financially Integrating East Asia by Jenny Corbett, Ying Xu 270 Pages, Published 2014 by Routledge ISBN-13: 978-1-317-59645-5, ISBN: 1-317-59645-5 "Dyna Heng and Jenny Corbett 1. Introduction The lack of a clear benchmark for the appropriate level of precautionary reserves, and for the appropriate use of reserves, is a problem, both at the country level and at the global level. —Olivier Jeanne1 Over the past two decades, East Asian economies have accumulated a large amount of foreign reserves. The reserves in the region were merely US$0.7 trillion before the Asian crisis in 19 ..." |
 | | Cancer Bioinformatics by Ying Xu, David Puett, Juan Cui 368 Pages, Published 2014 by Springer ISBN-13: 978-1-4939-1381-7, ISBN: 1-4939-1381-6 "Recent studies have shown that BRCA mutations in normal breast cells can lead to generation of hydrogen peroxide, as one of the normal functions of BRCA is to neutralize this ROS (Martinez-Outschoorn et al. 2012). The same study also observed increased glycolysis and decreased oxidative phosphorylation, revealing the repression of the mitochondrial activities, which forces cells to increase their activity of glycolytic fermentation ..." |
 | | Cancer Bioinformatics by Ying Xu, David Puett, Juan Cui Published 2014 ISBN-13: 978-1-4939-1382-4, ISBN: 1-4939-1382-4 |
 | | Computational Systems Bioinformatics (Volume 7) by Peter Markstein, Ying Xu 356 Pages, Published 2008 by World Scientific ISBN-13: 978-1-908978-70-7, ISBN: 1-908978-70-8 "Markstein Peter, Xu Ying. terms t2 (GO:0010468) and t3 (GO:0065007) in Figure 1. Then dist JC (t2 ,t2) = dist JC (t3 ,t3) = 0, and sim L(t2 ,t2) = sim L(t3 ,t3) = 1. In other words, the methods of Lin and Jiang-Conrath cannot differentiate between two pairs of genes, one of which is associated with the term t2 (GO:0010468), and the other with t3 (GO:0065007) because ... Both are annotated with the GO term GO:0006412 (translation). ..." |
 | | Computational Systems Bioinformatics (Volume 6) by Peter Markstein, Ying Xu 472 Pages, Published 2007 by World Scientific ISBN-13: 978-1-908979-09-4, ISBN: 1-908979-09-7 "Our method would serve well for building filters that can be combined with existing methods such as FastP for increased specificity in selecting structures from the SCFG with conserved structural motifs. ACKNOWLEDGMENTS We would like to thank Mohammad Shafiullah for help on Scaling the code to large architectures, and Laura A. Quest/Brad Friedman/Mark Pauley for help with the manuscript. This research project was made possible by t ..." |
 | | Computational Systems Bioinformatics by Peter Markstein, Ying Xu 416 Pages, Published 2006 by World Scientific ISBN-13: 978-1-908979-47-6, ISBN: 1-908979-47-X "References 1. A. Dufour, V. Shinin, S. Tajbakhsh, N. Guillén, J.C. Olivo-Marin, and C. Zimmer, Segmenting and tracking fluorescent cells in dynamic 3-d microscopy with coupled active surfaces, IEEE Trans. Image Processing, vol. 14, no. 9, pp. 1396–1410, 2005. F. Frischknecht, P. Baldacci, B. Martin, C. Zimmer, S. Thiberge, J.-C. Olivo-Marin, S. L. Shorte, and R. Menard, Imaging movement of malaria parasites during transmission by A ..." |
 | | Microbial Functional Genomics by Jizhong Zhou, James M. Tiedje, Dorothea K. Thompson, Ying Xu Published 2005 ISBN-13: 978-0-471-64752-2, ISBN: 0-471-64752-7 |
 | | Computational Systems Bioinformatics CSB2007 Conference Proceedings, Volume 6, University of California, San Diego, 13-17 August 2007 by Peter Markstein, Ying Xu, Life Sciences Society Digital, 472 Pages, Published 2014 ISBN-13: 978-1-86094-873-2, ISBN: 1-86094-873-1 "Mukund Deshpande, Michihiro Kuramochi, Nikil Wale, and George Karypis. Frequent substructurebased approaches for classifying chemical compounds. IEEE TKDE., 17(8):1036-1050, 2005. F. Fouss, A. Pirotte, J. Renders, and M. Saerens. Random walk computation of similarities between nodes of a graph with application to collaborative filtering. IEEE TKDE, 19(3):355–369, 2007. V. J. Gillet, P. Willet, and J. Bradshaw. Similarity Searching ..." |
 | | Computational Systems Bioinformatics Csb2006 Conference Proceedings, Stanford CA, 14-18 August 2006 by Peter Markstein, Ying Xu Digital, 416 Pages, Published 2014 ISBN-13: 978-1-86094-757-5, ISBN: 1-86094-757-3 "Yu Lin Chunmei Liu Ying Liu Allan Lo Allan Lo Stefano Lonardi Ann Loraine Yonggang Lu Bin Ma Russell L. Malmberg Lisa Matthews Simon Mercer Mark A. Musen Jean-Christophe Olivo-Marin Alessandro Dal Palü Yanxiong Peng Gregory Pennington Enrico Pontelli Liviu Popescu Jan Prins Xinggin Qi R. Ravi Soo-Yon Rhee Geir Kjetil Sandve Esther Schmidt Patrick S. Schnable Dale Schuurmans Russell Schwartz Russell Schwartz Stanley Shackney Robert ..." |
 | | Measuring and Modeling the Web by Ying Xu, Stanford University 132 Pages, Published 2008 by Proquest ISBN-13: 978-0-549-85063-2, ISBN: 0-549-85063-5 |
 | | Modeling and Direct Numerical Simulation of Particle-laden Turbulent Flows by Ying Xu 186 Pages, Published 2008 by Proquest ISBN-13: 978-0-549-68881-5, ISBN: 0-549-68881-1 |
 | | Phosphodiesterases CNS Functions and Diseases by Han-Ting Zhang, Ying Xu, James M. O'donnell 471 Pages, Published 2017 by Springer ISBN-13: 978-3-319-58811-7, ISBN: 3-319-58811-7 |
 | | forgetful Noddy DIU SAN LUO SI DE Noddy by Enid Blyton, Danmei Liu, Ying Xu 30 Pages, Published 2004 by Foreign Language Teaching And Research Press ISBN-13: 978-7-5600-4133-9, ISBN: 7-5600-4133-7 |